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POPTR_0002s10620.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s10620.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s10620.1Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family (1290 aa)    
Predicted Functional Partners:
POPTR_0004s13660.1
DNA helicase; Belongs to the MCM family (761 aa)
     
   
  0.906
POPTR_0001s21920.1
Nuf2 family protein (670 aa)
     
 
  0.881
POPTR_0009s12440.1
DNA helicase; Belongs to the MCM family (821 aa)
     
   
  0.868
POPTR_0018s04830.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002324124.1]; Belongs to the protein kinase superfamily (204 aa)
     
 
  0.835
POPTR_0006s25160.1
Serine/threonine protein kinase; Belongs to the protein kinase superfamily (293 aa)
     
 
  0.835
POPTR_0006s08020.1
Kinase family protein; Belongs to the protein kinase superfamily (283 aa)
     
 
  0.835
POPTR_0004s01710.1
Uncharacterized protein (1158 aa)
     
 
  0.818
POPTR_0018s12080.1
DNA helicase; Belongs to the MCM family (726 aa)
     
        0.808
POPTR_0006s20300.1
DNA helicase; Belongs to the MCM family (726 aa)
     
        0.808
CPC901
Structural maintenance of chromosomes protein; Condensin complex components subunit [source-UniProtKB/TrEMBL;Acc-B9IJY0_POPTR] (1300 aa)
     
 
  0.761
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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