STRINGSTRING
POPTR_0002s10680.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s10680.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s10680.1Uncharacterized protein (521 aa)    
Predicted Functional Partners:
POPTR_0001s26420.1
Uncharacterized protein (676 aa)
 
  0.983
POPTR_0009s05730.1
Predicted protein (690 aa)
 
  0.983
POPTR_0001s34270.1
Predicted protein (691 aa)
 
  0.983
POPTR_0001s34260.1
Uncharacterized protein (326 aa)
   
  0.971
POPTR_0009s10440.1
Uncharacterized protein (467 aa)
   
  0.970
POPTR_0004s14810.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGV2_POPTR] (588 aa)
   
  0.970
POPTR_0005s22080.1
Anamorsin homolog; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Electrons are transferred to the Fe-S cluster from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Has anti- apoptotic effects in the cell (277 aa)
     
  0.898
POPTR_0002s06290.1
Predicted protein; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Electrons are transferred to the Fe-S cluster from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Has anti- apoptotic effects in the cell (300 aa)
     
  0.898
POPTR_0015s01950.1
Predicted protein (2228 aa)
 
   
  0.852
POPTR_0012s01860.1
Predicted protein (2230 aa)
 
   
  0.852
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (7%) [HD]