• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0002s11790.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s11790.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s11790.1Uncharacterized protein (160 aa)    
Predicted Functional Partners:
POPTR_0014s03460.1
Thioredoxin-related family protein (207 aa)
           
  0.684
POPTR_0001s23400.1
Uncharacterized protein; Belongs to the precorrin methyltransferase family (373 aa)
           
  0.666
POPTR_0010s05250.1
Uncharacterized protein (331 aa)
           
  0.603
POPTR_0017s08380.1
Ubiquitin-associated domain-containing family protein (414 aa)
           
  0.602
POPTR_0002s24600.1
Ubiquitin-associated domain-containing family protein (315 aa)
           
  0.602
POPTR_0001s32370.1
Ubiquitin-associated domain-containing family protein (415 aa)
           
  0.602
POPTR_0011s15900.1
Ribose 5-phosphate isomerase-related family protein (285 aa)
           
  0.601
POPTR_0001s23850.1
Uncharacterized protein (197 aa)
           
  0.587
POPTR_0016s00820.1
annotation not available (108 aa)
           
  0.580
POPTR_0016s00810.1
annotation not available (184 aa)
           
  0.580
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (10%) [HD]