STRINGSTRING
POPTR_0002s11940.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s11940.1" - Hypothetical protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s11940.1Hypothetical protein (974 aa)    
Predicted Functional Partners:
POPTR_0013s02570.1
Predicted protein (395 aa)
       
 
  0.871
POPTR_0013s02560.1
Uncharacterized protein (366 aa)
       
 
  0.871
POPTR_0002s00690.1
Predicted protein (396 aa)
       
 
  0.777
POPTR_0009s03270.1
Methyl binding domain protein [source-UniProtKB/TrEMBL;Acc-B9HPK6_POPTR] (236 aa)
       
 
  0.604
POPTR_0010s24060.1
Annotation not available (1414 aa)
       
 
  0.508
POPTR_0008s02610.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9HL37_POPTR] (1375 aa)
       
 
  0.508
ROS1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9MTN9_POPTR] (1329 aa)
       
 
  0.508
POPTR_0018s14820.1
Predicted protein (583 aa)
           
  0.426
POPTR_0015s01190.1
SET domain protein [source-UniProtKB/TrEMBL;Acc-B9IDM7_POPTR] (347 aa)
           
  0.424
POPTR_0012s02530.1
SET domain protein [source-UniProtKB/TrEMBL;Acc-B9I1Y7_POPTR] (342 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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