STRINGSTRING
POPTR_0002s12980.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s12980.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s12980.1Predicted protein; Lipolytic acyl hydrolase (LAH) (411 aa)    
Predicted Functional Partners:
POPTR_0015s15420.1
Predicted protein (536 aa)
           
  0.426
POPTR_0014s18450.1
Hypothetical protein (529 aa)
           
  0.426
POPTR_0014s01470.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGN2_POPTR] (433 aa)
           
  0.426
POPTR_0012s15190.1
Uncharacterized protein (251 aa)
           
  0.426
POPTR_0012s12220.1
Predicted protein (539 aa)
           
  0.426
POPTR_0009s15290.1
Uncharacterized protein (143 aa)
           
  0.426
POPTR_0008s07600.1
Predicted protein (444 aa)
           
  0.426
POPTR_0004s20140.1
Predicted protein (680 aa)
           
  0.426
POPTR_0003s06140.1
Predicted protein (674 aa)
           
  0.426
POPTR_0001s17100.1
Predicted protein (661 aa)
           
  0.426
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (12%) [HD]