STRINGSTRING
POPTR_0002s13270.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s13270.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s13270.1Predicted protein (546 aa)    
Predicted Functional Partners:
POPTR_0019s12340.1
Predicted protein (241 aa)
       
  0.697
POPTR_0019s12330.1
Uncharacterized protein (155 aa)
       
  0.697
POPTR_0018s07280.1
Predicted protein (189 aa)
       
  0.697
POPTR_0018s07270.1
Predicted protein (403 aa)
       
  0.697
POPTR_0015s15740.1
Predicted protein (142 aa)
       
  0.697
POPTR_0013s12460.1
Predicted protein (260 aa)
       
  0.697
POPTR_0009s15230.1
Annotation not available (283 aa)
       
  0.697
POPTR_0006s13800.1
Uncharacterized protein (190 aa)
       
  0.697
POPTR_0006s12550.1
Uncharacterized protein (275 aa)
       
  0.697
POPTR_0019s05540.1
Histone ubiquitination proteins group [source-UniProtKB/TrEMBL;Acc-A9PD36_POPTR] (152 aa)
       
  0.696
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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