STRINGSTRING
POPTR_0002s13370.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s13370.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s13370.1Predicted protein (73 aa)    
Predicted Functional Partners:
POPTR_0010s07660.1
Predicted protein (524 aa)
       
      0.731
POPTR_0008s17140.1
Predicted protein (524 aa)
       
      0.731
POPTR_0010s21600.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002315205.1] (191 aa)
       
      0.721
POPTR_0009s03300.1
Predicted protein (215 aa)
       
      0.721
POPTR_0008s05160.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002312037.1] (191 aa)
       
      0.721
POPTR_0001s24290.1
Predicted protein (216 aa)
       
      0.721
POPTR_0016s12570.1
Predicted protein (604 aa)
     
  0.655
POPTR_0005s10350.1
Predicted protein (596 aa)
     
  0.655
POPTR_2006s00200.1
Uncharacterized protein (143 aa)
     
  0.642
POPTR_0006s25970.1
Predicted protein; Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules (842 aa)
     
  0.642
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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