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POPTR_0002s13410.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s13410.1" - Zinc finger family protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s13410.1Zinc finger family protein (227 aa)    
Predicted Functional Partners:
POPTR_0001s19230.1
Polyadenylate-binding family protein (367 aa)
           
  0.601
POPTR_0003s05000.1
Peroxisome assembly protein 2 (340 aa)
     
 
  0.582
POPTR_0001s18670.1
Peroxisome assembly protein 2 (341 aa)
     
 
  0.582
POPTR_1510s00200.1
Uncharacterized protein (197 aa)
           
  0.546
POPTR_0019s15180.1
Eukaryotic translation initiation factor 2 beta subunit family protein (271 aa)
           
  0.546
POPTR_0013s15430.1
Eukaryotic translation initiation factor 2 beta subunit family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI50_POPTR] (270 aa)
           
  0.546
POPTR_0003s13080.1
Uncharacterized protein (183 aa)
           
  0.531
POPTR_0001s09700.1
annotation not available (154 aa)
           
  0.531
POPTR_0003s07470.1
Peroxisomal protein PEX19 (251 aa)
       
 
  0.509
POPTR_0001s15810.1
Peroxisomal protein PEX19 (253 aa)
       
 
  0.509
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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