STRINGSTRING
POPTR_0002s13480.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s13480.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s13480.1Predicted protein (317 aa)    
Predicted Functional Partners:
POPTR_0011s07130.1
Predicted protein (380 aa)
       
  0.940
POPTR_0004s05770.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGS5_POPTR] (380 aa)
       
  0.940
POPTR_0018s01530.1
Predicted protein (168 aa)
       
 
  0.722
POPTR_0006s26800.1
Predicted protein (169 aa)
       
 
  0.722
POPTR_0007s06940.1
Predicted protein (1193 aa)
       
 
  0.657
POPTR_0003s16610.1
Predicted protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (263 aa)
       
 
  0.621
POPTR_0001s13480.1
Isomerase peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (263 aa)
       
 
  0.621
POPTR_0007s12730.1
Cytochrome P450 probable campestanol to 6-deoxocathasterone or 6-oxocampestanol to cathasterone [source-UniProtKB/TrEMBL;Acc-B9HEW2_POPTR] (412 aa)
           
  0.576
POPTR_0005s12550.1
Predicted protein (419 aa)
           
  0.576
POPTR_0003s01740.1
Predicted protein (607 aa)
           
  0.535
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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