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POPTR_0002s14230.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s14230.1" - Zinc finger family protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s14230.1Zinc finger family protein (553 aa)    
Predicted Functional Partners:
POPTR_0019s05540.1
Histone ubiquitination proteins group [source-UniProtKB/TrEMBL;Acc-A9PD36_POPTR] (152 aa)
     
 
  0.958
POPTR_0015s07520.1
Histone ubiquitination proteins group [source-UniProtKB/TrEMBL;Acc-A9P8Z1_POPTR] (152 aa)
     
 
  0.958
POPTR_0013s06060.1
Histone ubiquitination proteins group [source-UniProtKB/TrEMBL;Acc-A9PBR0_POPTR] (152 aa)
     
 
  0.958
POPTR_0001s19090.1
PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9GGM7_POPTR] (689 aa)
     
 
  0.805
POPTR_0003s04730.1
PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9GXE7_POPTR] (569 aa)
     
 
  0.796
POPTR_0006s14570.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9I634_POPTR] (1086 aa)
     
 
  0.660
POPTR_0006s16270.1
Predicted protein (567 aa)
     
 
  0.654
POPTR_0017s06870.1
SET domain protein [source-UniProtKB/TrEMBL;Acc-B9MXU6_POPTR] (2476 aa)
     
 
  0.652
POPTR_0008s08280.1
Predicted protein (696 aa)
     
 
  0.642
POPTR_0010s15650.1
Predicted protein (268 aa)
     
 
  0.634
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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