STRINGSTRING
POPTR_0002s14950.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s14950.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s14950.1Predicted protein (325 aa)    
Predicted Functional Partners:
POPTR_0014s07790.1
Predicted protein (336 aa)
       
   
0.734
POPTR_0002s15960.1
Predicted protein (328 aa)
       
   
0.734
POPTR_0003s11580.1
Predicted protein (596 aa)
     
   
  0.527
POPTR_0001s02600.1
Uncharacterized protein (251 aa)
       
   
0.471
POPTR_0014s08110.1
Uncharacterized protein (539 aa)
     
   
  0.439
POPTR_0019s12660.1
Predicted protein (94 aa)
           
  0.426
POPTR_0019s12640.1
Predicted protein (77 aa)
           
  0.426
POPTR_0019s12610.1
Uncharacterized protein (92 aa)
           
  0.426
POPTR_0010s11980.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PDE5_POPTR] (215 aa)
           
  0.424
POPTR_0008s13170.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9HJD9_POPTR] (207 aa)
           
  0.424
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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