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POPTR_0002s15420.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s15420.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s15420.1Uncharacterized protein (295 aa)    
Predicted Functional Partners:
POPTR_0009s04560.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
  0.992
POPTR_0001s25490.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
     
  0.992
POPTR_0004s09310.1
Predicted protein (1142 aa)
     
  0.987
POPTR_0001s41800.1
Predicted protein (747 aa)
   
  0.979
POPTR_0014s17840.1
Predicted protein (1189 aa)
   
  0.977
POPTR_0012s05670.1
Predicted protein; Component of the post-replicative DNA mismatch repair system (MMR) (944 aa)
   
  0.974
POPTR_0005s20370.1
Predicted protein (342 aa)
   
  0.962
POPTR_0002s08060.1
Uncharacterized protein (333 aa)
   
  0.962
POPTR_0002s08030.1
Uncharacterized protein (271 aa)
   
  0.962
POPTR_0012s09330.1
Predicted protein (965 aa)
   
 
  0.956
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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