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POPTR_0002s16040.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s16040.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s16040.1Uncharacterized protein (352 aa)    
Predicted Functional Partners:
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
     
 
  0.787
POPTR_0018s01530.1
BZIP with a Ring-finger motif family protein (168 aa)
       
 
  0.631
POPTR_0006s26800.1
BZIP with a Ring-finger motif family protein (169 aa)
       
 
  0.631
POPTR_0004s13570.1
annotation not available (324 aa)
       
 
  0.619
POPTR_0004s06420.1
FLAGELLIN-SENSITIVE 2 family protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family (1158 aa)
       
 
  0.619
POPTR_0018s05160.1
annotation not available (266 aa)
       
 
  0.618
POPTR_0006s24560.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGX1_POPTR] (303 aa)
       
 
  0.618
POPTR_0007s07350.1
Protein-S-isoprenylcysteine O-methyltransferase; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PB59_POPTR] (197 aa)
     
   
  0.600
POPTR_0005s09180.1
Protein-S-isoprenylcysteine O-methyltransferase (197 aa)
     
   
  0.600
POPTR_0010s09940.1
Uncharacterized protein (355 aa)
           
  0.519
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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