STRINGSTRING
POPTR_0002s16460.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s16460.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s16460.1Predicted protein (362 aa)    
Predicted Functional Partners:
POPTR_0001s06240.1
Predicted protein (650 aa)
     
 
  0.763
POPTR_0001s21340.1
Hypothetical protein (683 aa)
     
 
  0.723
POPTR_0002s18190.1
Predicted protein (710 aa)
     
 
  0.582
POPTR_0015s00440.1
Pseudo response regulator [source-UniProtKB/TrEMBL;Acc-B9IDF0_POPTR] (687 aa)
     
 
  0.549
POPTR_0014s10160.1
Pseudo response regulator [source-UniProtKB/TrEMBL;Acc-B9I950_POPTR] (717 aa)
     
 
  0.549
POPTR_0012s00600.1
Pseudo response regulator (569 aa)
     
 
  0.549
POPTR_0002s18050.1
Pseudo response regulator [source-UniProtKB/TrEMBL;Acc-B9GRR4_POPTR] (694 aa)
     
 
  0.549
POPTR_0017s02990.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9GUU0_POPTR] (244 aa)
       
 
  0.496
POPTR_0004s08650.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9H397_POPTR] (245 aa)
       
 
  0.496
POPTR_0014s08250.1
Predicted protein (426 aa)
           
  0.493
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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