STRINGSTRING
POPTR_0002s17090.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s17090.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s17090.1Predicted protein (1336 aa)    
Predicted Functional Partners:
POPTR_0006s07760.1
Predicted protein (985 aa)
     
 
  0.810
POPTR_0004s23750.1
Predicted protein (1012 aa)
     
 
  0.810
POPTR_0018s14280.1
Uncharacterized protein (1113 aa)
     
 
  0.805
POPTR_0008s07580.1
Dicer-like protein [source-UniProtKB/TrEMBL;Acc-B9HHX6_POPTR] (1468 aa)
     
 
  0.784
POPTR_0015s13070.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PDE2_POPTR] (375 aa)
     
 
  0.769
POPTR_0009s15750.1
Predicted protein (656 aa)
     
 
  0.769
POPTR_0004s20450.1
Predicted protein (677 aa)
     
 
  0.769
POPTR_0001s32550.1
DNA topoisomerase ; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand (317 aa)
     
 
  0.769
POPTR_0012s06300.1
Predicted protein (773 aa)
     
 
  0.677
POPTR_0013s05950.1
3’-5’ exonuclease domain-containing family protein (697 aa)
     
 
  0.612
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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