STRINGSTRING
POPTR_0002s17230.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s17230.1" - Hypothetical protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s17230.1Hypothetical protein (159 aa)    
Predicted Functional Partners:
POPTR_0019s08320.1
Predicted protein (135 aa)
           
  0.624
POPTR_0715s00200.1
Uncharacterized protein (66 aa)
   
          0.524
POPTR_0010s16790.1
Predicted protein (647 aa)
           
  0.505
POPTR_0002s10890.1
Uncharacterized protein (123 aa)
           
  0.493
POPTR_0022s00770.1
Uncharacterized protein (236 aa)
         
  0.456
POPTR_0014s11300.1
Predicted protein (220 aa)
         
  0.456
POPTR_0010s24390.1
Predicted protein (279 aa)
         
  0.456
POPTR_0008s02270.1
Predicted protein (279 aa)
         
  0.456
POPTR_0006s17930.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHC7_POPTR] (224 aa)
         
  0.456
POPTR_0004s23140.1
Predicted protein (234 aa)
         
  0.456
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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