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POPTR_0002s17300.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s17300.1" - Hypothetical protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s17300.1Hypothetical protein (323 aa)    
Predicted Functional Partners:
RDM1
Predicted protein (175 aa)
       
 
  0.850
POPTR_0009s12350.1
Chromatin remodeling complex subunit [source-UniProtKB/TrEMBL;Acc-B9H0U7_POPTR] (905 aa)
     
 
  0.693
POPTR_0004s16640.1
Hypothetical protein (912 aa)
     
 
  0.693
POPTR_0015s09070.1
Predicted protein (495 aa)
     
 
  0.633
POPTR_0012s09080.1
Hypothetical protein (682 aa)
     
 
  0.633
POPTR_0005s12040.1
Predicted protein (657 aa)
     
 
  0.633
POPTR_0005s23470.1
Predicted protein (166 aa)
       
 
  0.565
POPTR_0015s08500.1
Rna-dependent RNA polymerase [source-UniProtKB/TrEMBL;Acc-B9IEP4_POPTR] (1110 aa)
     
   
  0.555
POPTR_0003s19630.1
RNA polymerase IV subunit [source-UniProtKB/TrEMBL;Acc-B9GWX9_POPTR]; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1920 aa)
     
 
  0.520
POPTR_0001s08650.1
Hypothetical protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1109 aa)
     
 
  0.520
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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