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POPTR_0002s17600.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s17600.1" - Predicted protein, mRNA [source:RefSeq DNA_predicted in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s17600.1Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002334785.1] (108 aa)    
Predicted Functional Partners:
POPTR_0017s13890.1
Predicted protein (197 aa)
   
          0.506
POPTR_0011s10990.1
Predicted protein (80 aa)
   
          0.497
POPTR_0014s05740.1
Predicted protein (211 aa)
   
          0.477
POPTR_0013s14060.1
Predicted protein (127 aa)
     
        0.470
POPTR_0133s00230.1
Uncharacterized protein (207 aa)
   
          0.460
POPTR_0015s04810.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PID9_POPTR] (204 aa)
   
          0.457
POPTR_0001s20750.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHK9_POPTR] (171 aa)
   
          0.435
POPTR_0005s08630.1
Predicted protein (321 aa)
   
          0.415
POPTR_0004s10180.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH66_POPTR] (285 aa)
   
          0.401
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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