STRINGSTRING
POPTR_0002s17860.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s17860.1" - Predicted protein, mRNA [source:RefSeq DNA_predicted in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s17860.1Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002301400.1] (468 aa)    
Predicted Functional Partners:
POPTR_0008s11920.1
3-ketoacyl-CoA synthase (496 aa)
     
   
0.620
POPTR_0010s13510.1
3-ketoacyl-CoA synthase (496 aa)
     
   
0.618
ERF25
Uncharacterized protein; AP2/ERF domain-containing transcription factor [source-UniProtKB/TrEMBL;Acc-B9N9M3_POPTR] (183 aa)
           
  0.600
ERF24
Uncharacterized protein; AP2/ERF domain-containing transcription factor [source-UniProtKB/TrEMBL;Acc-B9H2N1_POPTR] (183 aa)
           
  0.600
MTHFR2
Methylenetetrahydrofolate reductase; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P8D1_POPTR] (605 aa)
           
  0.598
MTHFR1
Methylenetetrahydrofolate reductase [source-UniProtKB/TrEMBL;Acc-B9HG95_POPTR] (608 aa)
           
  0.598
POPTR_0008s03160.1
Uncharacterized protein (442 aa)
           
  0.597
POPTR_0010s24290.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PCL8_POPTR] (85 aa)
           
  0.594
PRX59
Peroxidase; Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily (341 aa)
           
  0.594
POPTR_0008s11000.1
Peroxidase; Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily (312 aa)
           
  0.594
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (7%) [HD]