Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
annotation not available (784 aa)
Predicted Functional Partners:
Uncharacterized protein; Dicer-like 3; Belongs to the helicase family. Dicer subfamily (1476 aa)
Pyruvate dehydrogenase kinase family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P9D7_POPTR] (372 aa)
Ankyrin repeat family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGF7_POPTR] (442 aa)
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1110 aa)
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1215 aa)
Ankyrin repeat family protein (447 aa)
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1737 aa)
Uncharacterized protein (239 aa)
Endoribonuclease Dicer family protein; Dicer-like 1; Belongs to the helicase family. Dicer subfamily (1967 aa)
RNA-directed DNA methylation 1 (175 aa)
Your Current Organism:
NCBI taxonomy Id: 3694 Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar