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STRINGSTRING
POPTR_0002s18590.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s18590.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s18590.1annotation not available (784 aa)    
Predicted Functional Partners:
POPTR_0018s08340.1
Uncharacterized protein; Dicer-like 3; Belongs to the helicase family. Dicer subfamily (1476 aa)
   
 
  0.628
POPTR_0010s00440.1
Pyruvate dehydrogenase kinase family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P9D7_POPTR] (372 aa)
     
 
  0.613
POPTR_0001s24570.1
Ankyrin repeat family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGF7_POPTR] (442 aa)
     
 
  0.609
RDR904
RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) (1110 aa)
     
   
  0.608
POPTR_0004s04320.1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1215 aa)
     
   
  0.601
POPTR_0009s03530.1
Ankyrin repeat family protein (447 aa)
     
 
  0.599
POPTR_0005s10940.1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1737 aa)
     
   
  0.599
POPTR_0001s19000.1
Uncharacterized protein (239 aa)
           
  0.583
POPTR_0002s18240.1
Endoribonuclease Dicer family protein; Dicer-like 1; Belongs to the helicase family. Dicer subfamily (1967 aa)
   
 
  0.578
RDM1
RNA-directed DNA methylation 1 (175 aa)
           
  0.577
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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