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STRINGSTRING
POPTR_0002s18930.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s18930.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s18930.1annotation not available (343 aa)    
Predicted Functional Partners:
POPTR_0002s03470.1
Ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family (96 aa)
   
 
  0.884
POPTR_0018s11170.1
50S ribosomal protein L35; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBS9_POPTR]; Belongs to the bacterial ribosomal protein bL35 family (125 aa)
   
 
  0.872
POPTR_0001s33710.1
Ribosomal protein L27 (194 aa)
   
 
  0.855
POPTR_0012s12870.1
Uncharacterized protein (410 aa)
 
      0.837
POPTR_0005s15150.1
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (126 aa)
 
 
  0.837
POPTR_0012s08870.1
Uncharacterized protein (242 aa)
 
      0.824
POPTR_0001s15230.1
Ribosomal protein L19 (241 aa)
 
      0.821
POPTR_0002s13330.1
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (211 aa)
 
      0.815
POPTR_0014s03900.1
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (210 aa)
 
      0.813
POPTR_0022s00790.1
annotation not available (149 aa)
     
 
  0.812
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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