STRINGSTRING
POPTR_0002s19090.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s19090.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s19090.1Predicted protein (227 aa)    
Predicted Functional Partners:
POPTR_0006s28820.1
Uncharacterized protein (566 aa)
           
  0.493
POPTR_0004s10180.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PH66_POPTR] (285 aa)
   
        0.480
POPTR_0009s06470.1
Predicted protein (376 aa)
   
        0.473
POPTR_0009s06450.1
Predicted protein (376 aa)
   
        0.455
POPTR_0012s13790.1
Predicted protein (364 aa)
              0.451
POPTR_0012s13780.1
Predicted protein (370 aa)
              0.451
POPTR_0017s05900.1
Predicted protein (263 aa)
   
          0.447
POPTR_0013s00930.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PES3_POPTR] (1065 aa)
     
   
  0.446
POPTR_2108s00210.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002327933.1] (265 aa)
   
          0.446
POPTR_0001s12540.1
Predicted protein (445 aa)
   
          0.437
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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