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STRINGSTRING
POPTR_0002s22870.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s22870.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s22870.1annotation not available (252 aa)    
Predicted Functional Partners:
POPTR_0005s12480.1
Protein of unknown function (DUF59) (144 aa)
       
 
  0.921
POPTR_0003s09670.1
Uncharacterized protein (155 aa)
       
 
  0.921
POPTR_0001s01820.1
Uncharacterized protein (158 aa)
       
 
  0.921
POPTR_0228s00220.1
Uncharacterized protein; Belongs to the NPH3 family (223 aa)
     
 
  0.915
POPTR_0003s12220.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002303527.1] (225 aa)
     
 
  0.915
POPTR_0003s04720.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002304182.1] (913 aa)
     
 
  0.915
POPTR_0003s04710.1
annotation not available (135 aa)
     
 
  0.915
POPTR_0001s36200.1
Uncharacterized protein (318 aa)
 
 
 
  0.745
POPTR_0012s10930.1
Uncharacterized protein (337 aa)
   
     
  0.709
POPTR_0777s00210.1
annotation not available (245 aa)
       
 
  0.698
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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