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POPTR_0002s22890.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s22890.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s22890.1Uncharacterized protein (350 aa)    
Predicted Functional Partners:
POPTR_0017s05470.1
Mce-related family protein (384 aa)
     
 
  0.911
POPTR_0007s01670.1
Mce-related family protein (384 aa)
     
 
  0.911
POPTR_0002s12140.1
Glycine-rich family protein (84 aa)
       
 
  0.880
PtrTGD1
ABC transporter family protein [source-UniProtKB/TrEMBL;Acc-B9GNC5_POPTR]; Belongs to the MlaE permease family (352 aa)
 
     
  0.850
POPTR_0010s00520.1
Uncharacterized protein; Pigment defective 320 (427 aa)
           
  0.826
POPTR_0001s00830.1
Uncharacterized protein (520 aa)
           
  0.741
POPTR_0008s01320.1
White-brown-complex ABC transporter family (327 aa)
     
   
  0.660
POPTR_0008s20440.2
Uncharacterized protein (382 aa)
         
  0.626
DHFR-TS-2
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (528 aa)
   
   
  0.611
DHFR-TS-1
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (528 aa)
   
   
  0.611
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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