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STRINGSTRING
ABP1 protein (Populus trichocarpa) - STRING interaction network
"ABP1" - Auxin binding protein [source:UniProtKB/TrEMBL in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP1Auxin binding protein [source-UniProtKB/TrEMBL;Acc-B9N924_POPTR] (194 aa)    
Predicted Functional Partners:
POPTR_0019s08050.1
Uncharacterized protein (168 aa)
           
  0.738
POPTR_0013s08440.1
Uncharacterized protein (169 aa)
           
  0.738
POPTR_0019s13210.1
Zinc finger family protein (263 aa)
       
 
  0.694
POPTR_0013s13580.1
Zinc finger family protein (263 aa)
       
 
  0.694
POPTR_0011s12140.1
Uncharacterized protein (257 aa)
       
 
  0.694
POPTR_0011s05150.1
Putative RING family protein (233 aa)
       
 
  0.694
POPTR_0004s04270.1
Putative RING family protein (233 aa)
       
 
  0.694
POPTR_0001s41200.1
Uncharacterized protein (257 aa)
       
 
  0.694
POPTR_0018s09020.1
RAC-like GTP binding protein ARAC7; Belongs to the small GTPase superfamily. Rho family (209 aa)
   
     
  0.680
PIN9
Auxin efflux carrier component; May act as a component of the auxin efflux carrier (633 aa)
           
  0.679
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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