STRINGSTRING
POPTR_0002s23490.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s23490.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s23490.1Predicted protein (1028 aa)    
Predicted Functional Partners:
POPTR_0003s20120.1
Predicted protein (699 aa)
     
  0.919
POPTR_1155s00200.1
Uncharacterized protein (138 aa)
     
  0.882
POPTR_0001s15040.1
Predicted protein (925 aa)
     
  0.814
POPTR_0003s03170.1
Uncharacterized protein (692 aa)
     
  0.808
POPTR_0013s11390.1
Predicted protein (1220 aa)
     
 
  0.712
POPTR_0013s11470.1
Uncharacterized protein (104 aa)
     
 
  0.650
POPTR_0013s11450.1
Predicted protein (386 aa)
     
 
  0.650
POPTR_0013s11430.1
Uncharacterized protein (102 aa)
     
 
  0.650
POPTR_0004s09310.1
Predicted protein (1142 aa)
     
  0.621
POPTR_0006s02430.1
Predicted protein (1476 aa)
     
  0.582
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
Server load: low (8%) [HD]