STRINGSTRING
POPTR_0002s23890.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s23890.1" - Annotation not available in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s23890.1Annotation not available (341 aa)    
Predicted Functional Partners:
POPTR_0007s09640.1
Predicted protein (308 aa)
     
 
    0.902
POPTR_0005s11470.1
Uncharacterized protein (169 aa)
     
 
    0.902
POPTR_0019s00240.1
DNA (cytosine-5)-methyltransferase AthI family protein (1576 aa)
   
  0.678
POPTR_0006s26700.1
Hypothetical protein (380 aa)
   
  0.678
POPTR_0004s14140.1
DNA methyltransferase [source-UniProtKB/TrEMBL;Acc-B9H419_POPTR] (1529 aa)
   
  0.678
POPTR_0003s09920.1
Uncharacterized protein (972 aa)
   
  0.678
POPTR_0001s04700.1
DNA methyltransferase [source-UniProtKB/TrEMBL;Acc-B9GLJ3_POPTR] (970 aa)
   
  0.678
POPTR_0018s02030.1
Predicted protein (529 aa)
     
        0.612
POPTR_0006s27350.1
Predicted protein (597 aa)
     
        0.612
POPTR_0009s06380.1
Predicted protein; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1482 aa)
     
      0.571
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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