STRINGSTRING
POPTR_0002s24210.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s24210.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
POPTR_0002s24210.1Predicted protein (209 aa)    
Predicted Functional Partners:
POPTR_0008s00280.1
Predicted protein (168 aa)
   
          0.514
POPTR_0010s26200.1
Predicted protein (184 aa)
   
          0.512
POPTR_0015s13640.1
Predicted protein (288 aa)
   
        0.510
POPTR_0018s09880.1
Ribulose bisphosphate carboxylase small chain ; RuBisCO catalyzes two reactions- the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (231 aa)
   
          0.500
POPTR_0001s10480.1
Uncharacterized protein (119 aa)
   
          0.494
POPTR_0004s18360.1
Predicted protein (289 aa)
   
          0.488
POPTR_0002s02900.1
Uncharacterized protein (411 aa)
   
          0.488
POPTR_0019s15340.1
Uncharacterized protein (173 aa)
   
          0.478
POPTR_0004s08950.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PHY1_POPTR] (518 aa)
   
          0.474
POPTR_0007s13790.1
Predicted protein (282 aa)
   
          0.473
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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