STRINGSTRING
POPTR_0002s25600.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s25600.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s25600.1Predicted protein (747 aa)    
Predicted Functional Partners:
POPTR_0012s07680.1
Predicted protein (810 aa)
       
  0.721
POPTR_0002s17130.1
Predicted protein (516 aa)
       
  0.709
POPTR_0010s02420.1
Predicted protein (463 aa)
     
 
    0.582
POPTR_0008s22640.1
Predicted protein (480 aa)
     
 
    0.582
POPTR_0006s15790.1
Predicted protein (1497 aa)
     
 
  0.542
POPTR_0015s07910.1
Predicted protein (320 aa)
       
    0.514
POPTR_0011s12700.1
Predicted protein (116 aa)
       
    0.514
POPTR_0011s12110.1
Predicted protein (165 aa)
       
    0.514
POPTR_0010s11900.1
Hypothetical protein (103 aa)
       
    0.514
POPTR_0008s22460.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002328591.1] (135 aa)
       
    0.514
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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