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STRINGSTRING
POPTR_0002s25660.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s25660.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s25660.1Uncharacterized protein (588 aa)    
Predicted Functional Partners:
POPTR_0015s15710.1
Uncharacterized protein (297 aa)
       
 
  0.909
POPTR_0002s22350.1
Cc-nbs-lrr resistance protein; Belongs to the disease resistance NB-LRR family (920 aa)
       
 
  0.909
POPTR_0009s16220.1
RuvB-like helicase; Belongs to the RuvB family (441 aa)
           
  0.793
POPTR_0004s20930.1
annotation not available (455 aa)
           
  0.793
POPTR_0003s10880.1
Zinc finger family protein (581 aa)
           
  0.741
POPTR_0001s00610.1
Zinc finger family protein (571 aa)
           
  0.741
POPTR_0002s24680.1
RPM1-interacting protein 4 (264 aa)
           
  0.640
POPTR_0001s10780.1
Uncharacterized protein (932 aa)
           
  0.459
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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