STRINGSTRING
POPTR_0002s25910.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0002s25910.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0002s25910.1Uncharacterized protein (299 aa)    
Predicted Functional Partners:
POPTR_0016s12120.1
C2 domain-containing family protein (1053 aa)
           
  0.799
POPTR_0006s09960.1
C2 domain-containing family protein (1023 aa)
           
  0.799
POPTR_0017s07850.1
Uncharacterized protein (199 aa)
           
  0.741
POPTR_0009s14540.1
annotation not available (220 aa)
           
  0.741
POPTR_0009s14530.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002313640.1] (215 aa)
           
  0.741
POPTR_0004s19420.1
Uncharacterized protein (352 aa)
           
  0.741
POPTR_0001s31900.1
Uncharacterized protein (246 aa)
           
  0.741
POPTR_0009s08610.1
Uncharacterized protein (407 aa)
           
  0.732
POPTR_0014s14610.1
annotation not available (305 aa)
           
  0.688
POPTR_0014s14600.1
annotation not available (267 aa)
           
  0.688
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (7%) [HD]