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POPTR_0003s01150.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s01150.1" - THIAMINE REQUIRING 1 family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s01150.1THIAMINE REQUIRING 1 family protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGH5_POPTR] (531 aa)    
Predicted Functional Partners:
POPTR_0003s17300.1
Hydroxyethylthiazole kinase family protein (280 aa)
   
 
  0.998
POPTR_0001s14090.1
Hydroxyethylthiazole kinase family protein (182 aa)
   
 
  0.998
POPTR_0009s04780.2
Uncharacterized protein (637 aa)
 
 
  0.990
POPTR_0001s25630.1
annotation not available (475 aa)
 
 
  0.990
POPTR_0008s10610.1
Seed maturation protein PM36 (225 aa)
   
 
  0.985
POPTR_0016s02410.1
Uncharacterized protein (485 aa)
       
    0.903
POPTR_0006s02620.1
Uncharacterized protein (369 aa)
       
    0.903
POPTR_0005s10450.1
Uncharacterized protein (134 aa)
         
    0.900
POPTR_0005s21670.1
Uncharacterized protein (365 aa)
         
  0.851
POPTR_0014s12540.1
annotation not available (216 aa)
   
   
  0.822
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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