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STRINGSTRING
POPTR_0003s01700.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s01700.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s01700.1annotation not available (490 aa)    
Predicted Functional Partners:
POPTR_0016s04070.1
Dyskerin family protein (500 aa)
       
 
  0.908
POPTR_0006s04270.1
Dyskerin family protein (593 aa)
       
 
  0.908
POPTR_0011s10870.1
Ku70-like family protein (628 aa)
     
 
  0.887
POPTR_0011s10840.1
annotation not available (115 aa)
     
 
  0.887
POPTR_0011s05360.1
Uncharacterized protein (1035 aa)
     
 
  0.877
POPTR_0006s03670.1
Uncharacterized protein (954 aa)
     
 
  0.877
POPTR_0004s04510.1
Uncharacterized protein (1017 aa)
     
 
  0.877
POPTR_0001s28220.2
Uncharacterized protein (972 aa)
     
 
  0.877
POPTR_0014s06530.1
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase (700 aa)
     
 
  0.864
POPTR_0002s14910.1
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase (656 aa)
     
 
  0.864
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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