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POPTR_0003s01870.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s01870.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s01870.1Predicted protein (544 aa)    
Predicted Functional Partners:
POPTR_0021s00360.1
Uncharacterized protein (417 aa)
     
        0.470
POPTR_0012s12400.1
Uncharacterized protein (422 aa)
     
        0.470
POPTR_0008s05530.1
Predicted protein (293 aa)
     
        0.470
POPTR_0006s06950.1
Predicted protein (129 aa)
     
        0.470
POPTR_0005s24250.1
Predicted protein (104 aa)
     
        0.470
POPTR_0001s03660.1
Cinnamoyl CoA reductase [source-UniProtKB/TrEMBL;Acc-B9N9Z0_POPTR] (337 aa)
     
        0.470
POPTR_0001s23080.1
Predicted protein (519 aa)
     
        0.462
POPTR_2786s00200.1
Patatin ; Lipolytic acyl hydrolase (LAH) (107 aa)
     
        0.440
POPTR_0001s23060.1
Uncharacterized protein (462 aa)
     
        0.439
POPTR_2696s00200.1
Uncharacterized protein (127 aa)
     
        0.413
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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