STRINGSTRING
POPTR_0003s02540.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s02540.1" - Predicted protein in Populus trichocarpa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s02540.1Predicted protein (407 aa)    
Predicted Functional Partners:
POPTR_0018s00860.1
Predicted protein (2173 aa)
   
 
  0.645
POPTR_0015s07690.1
Predicted protein (528 aa)
       
 
  0.609
POPTR_0017s10670.1
Uncharacterized protein (1605 aa)
   
   
  0.608
POPTR_0015s13250.1
Predicted protein (541 aa)
   
   
  0.608
POPTR_0015s04270.1
Hypothetical protein (504 aa)
   
   
  0.608
POPTR_0014s07330.1
Predicted protein (615 aa)
   
   
  0.608
POPTR_0013s12940.1
Uncharacterized protein (108 aa)
   
   
  0.608
POPTR_0013s12930.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002330622.1] (238 aa)
   
   
  0.608
POPTR_0013s11880.1
Uncharacterized protein (351 aa)
   
   
  0.608
POPTR_0013s00270.1
Uncharacterized protein ; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts [...] (360 aa)
   
   
  0.608
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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