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POPTR_0003s04050.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s04050.1" - Predicted protein in Populus trichocarpa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s04050.1Predicted protein (1241 aa)    
Predicted Functional Partners:
POPTR_0009s04560.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
   
  0.947
POPTR_0001s25490.1
Predicted protein; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
   
  0.947
POPTR_0013s01320.1
Predicted protein (215 aa)
       
 
  0.930
POPTR_0012s05530.1
Hypothetical protein (179 aa)
       
 
  0.930
POPTR_0001s22140.1
Predicted protein (981 aa)
   
  0.925
POPTR_0019s05640.1
Predicted protein (353 aa)
   
  0.922
POPTR_0014s17680.1
Predicted protein (725 aa)
   
  0.922
POPTR_0007s13090.1
Predicted protein (924 aa)
   
  0.922
POPTR_0005s20220.1
Predicted protein (98 aa)
   
  0.922
POPTR_0005s19940.1
Predicted protein (1203 aa)
   
  0.922
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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