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POPTR_0003s04720.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s04720.1" - Predicted protein, mRNA [source:RefSeq DNA_predicted in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s04720.1Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002304182.1] (913 aa)    
Predicted Functional Partners:
POPTR_0003s09670.1
Predicted protein (155 aa)
       
  0.975
POPTR_0001s01820.1
Predicted protein (158 aa)
       
  0.975
POPTR_0005s12480.1
Uncharacterized protein (144 aa)
       
  0.972
POPTR_0002s05500.1
Predicted protein (758 aa)
     
  0.971
POPTR_0014s13250.1
Predicted protein (166 aa)
       
  0.968
POPTR_0002s22870.1
Hypothetical protein (252 aa)
       
  0.968
POPTR_0001s22840.1
Uncharacterized protein (96 aa)
       
  0.968
POPTR_0001s22820.1
Predicted protein; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins (350 aa)
       
  0.968
POPTR_0007s10880.1
Predicted protein (1536 aa)
     
  0.829
POPTR_0005s06690.1
Predicted protein (1088 aa)
     
  0.828
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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