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STRINGSTRING
PAFA902 protein (Populus trichocarpa) - STRING interaction network
"PAFA902" - Hydroxyproline-rich glycoprotein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAFA902Hydroxyproline-rich glycoprotein; PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9GXE7_POPTR] (569 aa)    
Predicted Functional Partners:
PAFC901
Phosphoprotein; Predicted protein [source-UniProtKB/TrEMBL;Acc-B9I634_POPTR] (1086 aa)
     
 
  0.995
PAFB901
Uncharacterized protein; PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9I2V4_POPTR] (620 aa)
     
 
  0.987
PAFE901
RNA pol 2 accessory factor Cdc73 family protein; PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9HUU3_POPTR] (405 aa)
     
 
  0.970
PAFE902
PAF complex protein [source-UniProtKB/TrEMBL;Acc-B9NBP0_POPTR] (256 aa)
     
 
  0.969
PAFD901
Plus-3 domain-containing family protein; PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9H268_POPTR] (662 aa)
     
 
  0.966
PAFD902
Plus-3 domain-containing family protein; PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9HYK9_POPTR] (664 aa)
     
 
  0.966
HMGB906
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (610 aa)
     
 
  0.940
HMGB905
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (644 aa)
     
 
  0.940
POPTR_0006s14800.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PA15_POPTR] (321 aa)
       
 
  0.910
POPTR_0005s00700.1
annotation not available (1069 aa)
     
 
  0.882
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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