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POPTR_0003s04730.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s04730.1" - PAF1 complex component [source:UniProtKB/TrEMBL in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s04730.1PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9GXE7_POPTR] (569 aa)    
Predicted Functional Partners:
POPTR_0006s14570.1
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9I634_POPTR] (1086 aa)
     
  0.994
POPTR_0012s06710.1
PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9I2V4_POPTR] (620 aa)
     
  0.993
POPTR_0010s09560.1
PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9HUU3_POPTR] (405 aa)
     
  0.991
POPTR_0008s15480.1
PAF complex protein [source-UniProtKB/TrEMBL;Acc-B9NBP0_POPTR] (256 aa)
     
  0.990
POPTR_0004s03960.1
PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9H268_POPTR] (662 aa)
     
  0.988
POPTR_0011s04770.1
PAF1 complex component [source-UniProtKB/TrEMBL;Acc-B9HYK9_POPTR] (664 aa)
     
  0.988
POPTR_0017s11460.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9IJT6_POPTR] (610 aa)
     
  0.977
POPTR_0004s12290.1
High mobility group family [source-UniProtKB/TrEMBL;Acc-B9H0D7_POPTR] (644 aa)
     
  0.977
POPTR_0006s14800.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PA15_POPTR] (321 aa)
     
  0.977
POPTR_0005s00700.1
Uncharacterized protein (1069 aa)
     
  0.977
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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