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POPTR_0003s05050.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s05050.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s05050.1Predicted protein (159 aa)    
Predicted Functional Partners:
POPTR_0003s20420.1
Predicted protein (258 aa)
 
   
  0.818
POPTR_0018s11870.1
ABC transporter family protein (229 aa)
 
   
  0.805
POPTR_0010s01450.1
Predicted protein (275 aa)
       
      0.685
POPTR_0006s01080.1
Predicted protein (419 aa)
       
      0.685
POPTR_0006s04760.1
Predicted protein (510 aa)
   
   
  0.655
POPTR_0004s04220.1
Glutaredoxin S17 (PtrcGrx_S17.2), mRNA [source-RefSeq DNA_predicted;Acc-XM_002305767.1] (437 aa)
   
   
  0.647
POPTR_0002s07180.1
Predicted protein (291 aa)
   
   
  0.637
POPTR_0016s09210.1
EIN2-like protein, nramp transporter (1234 aa)
       
      0.596
POPTR_0007s10330.1
Nramp transporter (505 aa)
       
      0.596
POPTR_0007s10320.1
Nramp transporter (500 aa)
       
      0.596
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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