• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
POPTR_0003s05060.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s05060.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s05060.1Uncharacterized protein (975 aa)    
Predicted Functional Partners:
POPTR_0005s07680.1
Ras-related GTP-binding family protein (207 aa)
     
 
  0.882
POPTR_0003s08490.1
annotation not available (179 aa)
     
 
  0.882
POPTR_0002s13650.1
Ras-related GTP-binding family protein (208 aa)
     
 
  0.882
POPTR_0001s03090.2
Uncharacterized protein; RAB GTPase homolog H1A (93 aa)
     
 
  0.882
POPTR_0005s10280.1
Uncharacterized protein (791 aa)
     
 
  0.838
POPTR_0012s05810.1
CCAAT displacement family protein (689 aa)
     
 
  0.716
POPTR_0018s09370.1
Uncharacterized protein (702 aa)
     
   
  0.671
POPTR_0006s17770.1
Uncharacterized protein (325 aa)
     
   
  0.671
POPTR_0014s08700.1
Uncharacterized protein (774 aa)
     
   
  0.666
POPTR_0001s35520.1
Vesicle tethering family protein (915 aa)
     
   
  0.654
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
Server load: low (7%) [HD]