STRINGSTRING
POPTR_0003s05440.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s05440.1" - Predicted protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s05440.1Predicted protein (257 aa)    
Predicted Functional Partners:
POPTR_0004s04170.1
Predicted protein (449 aa)
     
  0.944
POPTR_0004s11240.1
Predicted protein (412 aa)
     
  0.943
POPTR_0007s04010.1
Predicted protein (603 aa)
     
  0.935
POPTR_0005s06260.1
Predicted protein (586 aa)
     
  0.935
POPTR_0018s11220.1
Predicted protein (204 aa)
     
  0.933
POPTR_0006s19470.1
Annotation not available (95 aa)
     
  0.933
POPTR_0006s19460.1
Predicted protein (107 aa)
     
  0.933
POPTR_0014s07510.1
Putative uncharacterized protein CDKD [source-UniProtKB/TrEMBL;Acc-B9IC95_POPTR] (398 aa)
     
  0.932
POPTR_0012s04790.1
Predicted protein (398 aa)
     
  0.932
POPTR_0017s03570.1
Predicted protein, mRNA [source-RefSeq DNA_predicted;Acc-XM_002331894.1] (121 aa)
     
  0.927
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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