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POPTR_0003s05960.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s05960.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s05960.1Uncharacterized protein (312 aa)    
Predicted Functional Partners:
POPTR_0003s15120.1
ARM repeat superfamily protein (2047 aa)
     
 
  0.996
POPTR_0007s12920.1
Nucleolar RNA-associated family protein; CONTAINS InterPro DOMAIN/s- Nrap protein (InterPro-IPR005554); Has 396 Blast hits to 382 proteins in 182 species- Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source- NCBI BLink) (1051 aa)
     
 
  0.996
POPTR_0006s12290.1
Transducin family protein (959 aa)
     
 
  0.993
POPTR_0018s14460.1
annotation not available (831 aa)
     
 
  0.993
POPTR_0006s07850.1
Transducin family protein (910 aa)
     
 
  0.993
POPTR_0010s15000.1
Uncharacterized protein (961 aa)
     
 
  0.993
POPTR_0014s13130.1
Transducin family protein (534 aa)
     
 
  0.992
POPTR_0002s22790.1
Uncharacterized protein (522 aa)
     
 
  0.992
POPTR_0015s08960.1
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA (554 aa)
     
 
  0.992
POPTR_0012s08430.1
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA (528 aa)
     
 
  0.992
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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