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POPTR_0003s06710.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s06710.1" - Predicted protein in Populus trichocarpa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s06710.1Predicted protein (364 aa)    
Predicted Functional Partners:
POPTR_0009s05240.1
Predicted protein (401 aa)
     
  0.957
POPTR_0001s26020.1
Predicted protein (401 aa)
     
  0.957
POPTR_0007s08910.1
Uncharacterized protein (285 aa)
     
 
  0.944
POPTR_0005s27300.1
Catalase [source-UniProtKB/TrEMBL;Acc-B9H5I0_POPTR]; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide (492 aa)
     
 
  0.944
POPTR_0005s10340.1
Catalase [source-UniProtKB/TrEMBL;Acc-B9H662_POPTR]; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide (519 aa)
     
 
  0.944
POPTR_0002s01080.1
Catalase [source-UniProtKB/TrEMBL;Acc-B9GQ08_POPTR]; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide (492 aa)
     
 
  0.944
POPTR_0016s00580.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PI23_POPTR] (304 aa)
     
 
  0.936
POPTR_0010s18770.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PF71_POPTR] (371 aa)
     
 
  0.936
POPTR_0008s07710.1
Predicted protein (384 aa)
     
 
  0.936
POPTR_0010s05530.1
Predicted protein (481 aa)
   
 
  0.929
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: Balanopales, Euphorbiales, Flacourtiaceae, Linales, Malpighiales, P. trichocarpa, Populus, Populus L., Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. et A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, Populus trichocarpa Torr. et A.Gray, Rhizophorales, Salicaceae, Saliceae, Violales, Violanae, black cottonwood, poplar, poplar trees, poplars, western balsam poplar, willow family
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