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POPTR_0003s06830.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s06830.1" - Chaperone DnaJ-domain superfamily protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s06830.1Chaperone DnaJ-domain superfamily protein (230 aa)    
Predicted Functional Partners:
POPTR_0006s00340.1
Uncharacterized protein (150 aa)
   
 
  0.768
POPTR_0010s07470.1
AWPM-19-like membrane family protein (181 aa)
           
  0.741
POPTR_0007s03990.1
Uncharacterized protein (142 aa)
   
 
  0.722
POPTR_0016s02100.1
Uncharacterized protein; Belongs to the heat shock protein 70 family (881 aa)
   
 
  0.719
POPTR_0006s02290.1
Uncharacterized protein; Belongs to the heat shock protein 70 family (899 aa)
   
 
  0.719
POPTR_0017s01160.1
Uncharacterized protein (703 aa)
     
 
  0.710
POPTR_0001s47360.1
Uncharacterized protein (164 aa)
   
 
  0.705
POPTR_0004s07190.1
Uncharacterized protein (703 aa)
     
 
  0.699
POPTR_0003s13180.1
Heat shock protein 90.1 (553 aa)
     
 
  0.699
POPTR_0001s08990.1
Heat shock transcription factor HSF29 family protein (343 aa)
     
 
  0.671
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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