Groups of genes that are frequently observed in each other's genomic neighborhood.
Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Predicted protein [source-UniProtKB/TrEMBL;Acc-B9GYD5_POPTR] (180 aa)
Predicted Functional Partners:
Uncharacterized protein (262 aa)
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PGU0_POPTR] (371 aa)
Uncharacterized protein; Belongs to the protein kinase superfamily (398 aa)
Uncharacterized protein; Belongs to the protein kinase superfamily (433 aa)
Uncharacterized protein; Belongs to the protein kinase superfamily (409 aa)
Kinase family protein; Belongs to the protein kinase superfamily (388 aa)
Uncharacterized protein (505 aa)
Kinase family protein (502 aa)
Uncharacterized protein (649 aa)
Uncharacterized protein (677 aa)
Your Current Organism:
NCBI taxonomy Id: 3694 Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar