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POPTR_0003s08300.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s08300.1" - Casein kinase II subunit beta in Populus trichocarpa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
POPTR_0003s08300.1Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit (276 aa)    
Predicted Functional Partners:
POPTR_0007s09940.1
annotation not available (117 aa)
     
 
  0.924
POPTR_0005s18950.1
Casein kinase II alpha chain family protein; Belongs to the protein kinase superfamily (333 aa)
     
 
  0.922
POPTR_0007s10100.1
Uncharacterized protein; Belongs to the protein kinase superfamily (394 aa)
     
 
  0.920
POPTR_0007s09950.1
annotation not available (352 aa)
     
 
  0.920
POPTR_0005s18960.1
Uncharacterized protein; Belongs to the protein kinase superfamily (444 aa)
     
 
  0.920
POPTR_0002s12090.1
annotation not available (181 aa)
     
 
  0.920
POPTR_0007s12920.1
Nucleolar RNA-associated family protein; CONTAINS InterPro DOMAIN/s- Nrap protein (InterPro-IPR005554); Has 396 Blast hits to 382 proteins in 182 species- Archae - 3; Bacteria - 2; Metazoa - 142; Fungi - 146; Plants - 43; Viruses - 0; Other Eukaryotes - 60 (source- NCBI BLink) (1051 aa)
       
 
  0.869
HMGB906
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (610 aa)
     
 
  0.844
HMGB905
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (644 aa)
     
 
  0.844
POPTR_0018s09190.1
Uncharacterized protein (1082 aa)
       
 
  0.820
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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