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POPTR_0003s08380.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s08380.1" - Senescence-associated family protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s08380.1Senescence-associated family protein (157 aa)    
Predicted Functional Partners:
POPTR_0013s08430.1
Tyrosine specific protein phosphatase; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PD71_POPTR] (202 aa)
       
 
  0.816
POPTR_0005s25590.1
Uncharacterized protein (311 aa)
       
 
  0.650
POPTR_0002s02970.1
Zinc finger protein CONSTANS-LIKE 6 (310 aa)
       
 
  0.650
POPTR_0002s22440.1
Uncharacterized protein (446 aa)
           
  0.603
POPTR_0003s05880.1
Cytochrome c oxidase family protein (163 aa)
       
      0.577
POPTR_0001s17370.1
Cytochrome c oxidase-related family protein (168 aa)
       
      0.577
POPTR_0007s12250.1
Calmodulin-like gene family protein (188 aa)
           
  0.537
POPTR_0005s12930.1
Uncharacterized protein (188 aa)
           
  0.537
POPTR_0547s00200.1
annotation not available (338 aa)
           
  0.459
POPTR_0014s05720.1
Uncharacterized protein; Belongs to the peptidase M10A family (357 aa)
           
  0.459
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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