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STRINGSTRING
POPTR_0003s08980.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s08980.1" - annotation not available in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s08980.1annotation not available (201 aa)    
Predicted Functional Partners:
POPTR_0004s15290.1
Uncharacterized protein (398 aa)
   
   
  0.845
POPTR_0005s25100.1
Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9P9Z5_POPTR]; Belongs to the ATCase/OTCase family (378 aa)
         
  0.782
POPTR_0003s12830.1
Uncharacterized protein (534 aa)
         
  0.778
POPTR_0010s24550.1
Uncharacterized protein (512 aa)
   
 
  0.745
POPTR_0008s02110.1
Uncharacterized protein (494 aa)
   
 
  0.745
POPTR_0010s08660.1
N-carbamyl-L-amino acid hydrolase family protein (473 aa)
           
  0.735
POPTR_0015s12400.1
Uncharacterized protein (194 aa)
           
  0.728
POPTR_0012s11640.1
Arginine biosynthesis bifunctional protein ArgJ, chloroplastic; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis- the synthesis of acetylglutamate from glutamate and acetyl-CoA, and of ornithine by transacetylation between acetylornithine and glutamate; Belongs to the ArgJ family (481 aa)
           
  0.728
POPTR_0018s04120.1
Uncharacterized protein (351 aa)
   
   
  0.703
POPTR_0006s29450.1
Uncharacterized protein (346 aa)
   
   
  0.703
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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