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POPTR_0003s09220.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s09220.1" - Uncharacterized protein in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s09220.1Uncharacterized protein (432 aa)    
Predicted Functional Partners:
POPTR_0005s20220.1
Replication factor C 36 kDa family protein (98 aa)
     
 
  0.990
POPTR_0009s04560.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
   
 
  0.988
POPTR_0001s25490.1
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (268 aa)
   
 
  0.988
POPTR_0003s12340.1
Replication factor C 40 kDa family protein (330 aa)
     
 
0.987
POPTR_0004s13660.1
DNA helicase; Belongs to the MCM family (761 aa)
   
 
  0.984
POPTR_0002s08170.1
Replication factor C 36 kDa family protein (363 aa)
     
 
0.982
POPTR_0010s06600.1
DNA polymerase alpha subunit B; May play an essential role at the early stage of chromosomal DNA replication by coupling the polymerase alpha/primase complex to the cellular replication machinery (618 aa)
     
 
  0.974
POPTR_0008s17900.1
annotation not available (263 aa)
     
 
  0.974
POPTR_0001s35170.1
Zinc finger family protein (393 aa)
     
 
  0.970
POPTR_0010s10750.1
Zinc knuckle family protein (283 aa)
     
 
  0.955
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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