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STRINGSTRING
POPTR_0003s09350.1 protein (Populus trichocarpa) - STRING interaction network
"POPTR_0003s09350.1" - Origin recognition complex second largest subunit 2 in Populus trichocarpa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POPTR_0003s09350.1Origin recognition complex second largest subunit 2 (363 aa)    
Predicted Functional Partners:
POPTR_0009s12440.1
DNA helicase; Belongs to the MCM family (821 aa)
     
 
  0.998
POPTR_0011s02280.1
Uncharacterized protein (285 aa)
     
 
  0.998
POPTR_0009s05910.1
Origin recognition complex 1 family protein (814 aa)
     
 
  0.998
POPTR_0001s25730.1
Cell division control protein; Putative uncharacterized protein [source-UniProtKB/TrEMBL;Acc-A9PBT1_POPTR]; Belongs to the CDC6/cdc18 family (494 aa)
     
 
  0.998
POPTR_0014s11610.1
DNA helicase; Belongs to the MCM family (718 aa)
     
 
  0.998
POPTR_0004s13660.1
DNA helicase; Belongs to the MCM family (761 aa)
     
 
  0.998
POPTR_0015s10230.1
Uncharacterized protein (592 aa)
     
 
  0.998
POPTR_0366s00220.1
annotation not available (403 aa)
     
 
  0.998
POPTR_0014s08170.1
Uncharacterized protein (536 aa)
     
 
  0.998
POPTR_0010s12750.1
Origin recognition complex subunit 4 family protein (228 aa)
     
 
  0.998
Your Current Organism:
Populus trichocarpa
NCBI taxonomy Id: 3694
Other names: P. trichocarpa, Populus balsamifera subsp. trichocarpa, Populus balsamifera subsp. trichocarpa (Torr. & A.Gray) Brayshaw, Populus trichocarpa, Populus trichocarpa Torr. & A.Gray, black cottonwood, western balsam poplar
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